Andrew Page > Bio-AutomatedAnnotation-1.133090 > Bio::AutomatedAnnotation::External::Cmscan

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NAME ^

Bio::AutomatedAnnotation::External::Cmscan - Run and parse the output of cmscan

VERSION ^

version 1.133090

SYNOPSIS ^

Run and parse the output of cmscan use Bio::AutomatedAnnotation::External::Cmscan;

   my $obj = Bio::AutomatedAnnotation::External::Cmscan->new(
     cmdb       => 'database/cm/Bacteria',
     input_file => 'abc.fa',
     exec       => 'cmscan',
     version    => '1.1',
     cpus       => 1,
     evalue     => 1E-6,
   );
  $obj->features;

AUTHOR ^

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE ^

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007
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