Andrew Page > Bio-AutomatedAnnotation-1.133090 > Bio::AutomatedAnnotation::GeneNameOccurances

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NAME ^

Bio::AutomatedAnnotation::GeneNameOccurances - Parse the gene names from multiple GFF files and provide a matrix of matches.

VERSION ^

version 1.133090

SYNOPSIS ^

Parse the gene names from multiple GFF files and provide a matrix of matches. use Bio::AutomatedAnnotation::GeneNameOccurances;

   my $obj = Bio::AutomatedAnnotation::GeneNameOccurances->new(
     gff_files   => ['abc.gff','efg.gff','hij.gff']
   );
   my %all_gene_names = %{$obj->all_gene_names};

METHODS ^

all_gene_names

Returns a HashRef where the keys are all observed gene names and the values are the frequency of occurance.

AUTHOR ^

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE ^

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007
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