Bio::Pipeline::Comparison::Generate::Evolve - Take in a reference genome and evolve it.
version 1.123050
Take in a reference genome and evolve it.
use Bio::Pipeline::Comparison::Generate::Evolve; my $obj = Bio::Pipeline::Comparison::Generate::Evolve->new(input_filename => 'reference.fa'); $obj->evolve; $obj->output_filename;
Evolve the genome and introduce variation.
Name of the output file. By default it gets generated from the input filename, but you can also pass in a name.
A Hash containing the mutation probablity of different bases. Can pass in new values or just use the defaults.
The probability of a SNP occuring. Set by default but can be overridden.
A VCF file writer is created by default but you can pass one in if you like.
Bio::Pipeline::Comparison
Andrew J. Page <ap13@sanger.ac.uk>
This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
To install Bio::Pipeline::Comparison, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Pipeline::Comparison
CPAN shell
perl -MCPAN -e shell install Bio::Pipeline::Comparison
For more information on module installation, please visit the detailed CPAN module installation guide.