Bio::Pipeline::Comparison::Report::InputParameters - Take in a set of input parameters for the evalute pipeline functionality, validate them, then manipulate them into a usable set.
version 1.123050
Take in a set of input parameters for the evalute pipeline functionality, validate them, then manipulate them into a usable set.
use Bio::Pipeline::Comparison::Report::InputParameters; my $obj = Bio::Pipeline::Comparison::Report::InputParameters->new(known_variant_filenames => ['abc.1.vcf.gz'], observed_variant_filenames => ['efg.1.vcf.gz']); $obj->known_to_observed_mappings
Returns an array of hashes with pairs of filenames, including full paths, 'known_filename' for the known, and 'observed_filename' for the observed.
Bio::Pipeline::Comparison
Andrew J. Page <ap13@sanger.ac.uk>
This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
To install Bio::Pipeline::Comparison, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Pipeline::Comparison
CPAN shell
perl -MCPAN -e shell install Bio::Pipeline::Comparison
For more information on module installation, please visit the detailed CPAN module installation guide.