Bio::Pipeline::Comparison::Report::ParseVCFCompare - Take in the output of VCF compare and return details about intersection of variants.
version 1.123050
Take in the output of VCF compare and return details about intersection of variants.
use Bio::Pipeline::Comparison::Report::ParseVCFCompare; my $obj = Bio::Pipeline::Comparison::Report::ParseVCFCompare->new( known_variant_filename => 'abc.1.vcf.gz', observed_variant_filename => 'efg.1.vcf.gz' ); $obj->number_of_false_positives; $obj->number_of_false_negatives; $obj->number_of_known_variants; $obj->number_of_observed_variants;
Bio::Pipeline::Comparison
Andrew J. Page <ap13@sanger.ac.uk>
This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
To install Bio::Pipeline::Comparison, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Pipeline::Comparison
CPAN shell
perl -MCPAN -e shell install Bio::Pipeline::Comparison
For more information on module installation, please visit the detailed CPAN module installation guide.