Andrew Page > Bio-Resistome-1.123560

Bio-Resistome-1.123560

This Release Bio-Resistome-1.123560  [Download] [Browse 21 Dec 2012
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Repository https://github.com/sanger-pathogens/Bio-Resistome.git
CPAN Testers PASS (302)   FAIL (33)   [ View Reports ] [ Perl/Platform Version Matrix ]
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License The GNU General Public License, Version not specified
Special Files
LICENSE
Makefile.PL
MANIFEST
META.yml
README

Modules

Bio::Resistome::Accessions Take in a list of accession numbers and extract the gene metadata      
Bio::Resistome::EMBL::AccessionLookup Take in an accession number, lookup EMBL and populate a datastructure      
Bio::Resistome::EMBL::Exceptions Exceptions for EMBL      
Bio::Resistome::GeneMetaData Datastructure to represent the meta data for a gene      
Bio::Resistome::Input::Exceptions Exceptions for input data      
Bio::Resistome::Input::FileOnePerLine File containing a list of input data, one per line.      
Bio::Resistome::Spreadsheet::File Create a spreadsheet file of results      
Bio::Resistome::Spreadsheet::LookupAccessions Create a spreadsheet containing accession lookup results.      
Bio::Resistome::Spreadsheet::LookupRow Create a row representation of the accession lookup results      

Documentation

Bio::Resistome Antibiotic resistome gene database  
lookup_accession_metadata Take in a list of accession numbers and lookup the metadata in EMBL  

Other Files

README.md