Bio::Roary::External::Mcl - Wrapper around MCL which takes in blast results and outputs clustered results
version 3.11.2
Wrapper around MCL which takes in blast results and outputs clustered results
use Bio::Roary::External::Mcl; my $mcl= Bio::Roary::External::Mcl->new( blast_results => 'db', mcxdeblast_exec => 'mcxdeblast', mcl_exec => 'mcl', output_file => 'output.groups' ); $mcl->run();
Andrew J. Page <ap13@sanger.ac.uk>
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
To install Bio::Roary, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Roary
CPAN shell
perl -MCPAN -e shell install Bio::Roary
For more information on module installation, please visit the detailed CPAN module installation guide.