Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL - Create an embl file for the header with locations of where genes are in the multifasta alignment of core genes
version 3.11.3
Create an embl file for the header with locations of where genes are in the multifasta alignment of core genes use Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL;
my $obj = Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL->new( output_filename => 'core_alignment_header.embl', multifasta_files => [ 't/data/multifasta_files/1.aln', 't/data/multifasta_files/outof_order.aln', 't/data/multifasta_files/2.aln', 't/data/multifasta_files/3.aln' ], gene_lengths => { 't/data/multifasta_files/1.aln' => 1, 't/data/multifasta_files/outof_order.aln' => 10, 't/data/multifasta_files/2.aln' => 100, 't/data/multifasta_files/3.aln' => 1000 }, ); $obj->create_file;
Andrew J. Page <ap13@sanger.ac.uk>
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
To install Bio::Roary, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Roary
CPAN shell
perl -MCPAN -e shell install Bio::Roary
For more information on module installation, please visit the detailed CPAN module installation guide.