Alexandre Masselot > InSilicoSpectro-Databanks-0.0.43

InSilicoSpectro-Databanks-0.0.43

This Release InSilicoSpectro-Databanks-0.0.43  [Download] [Browse 25 Aug 2008
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License lgpl
Special Files
Changes
Makefile.PL
MANIFEST
META.yml
README

Modules

InSilicoSpectro::Databanks parsing protein/nucleotides sequence databanks (fasta, uniprot...)     0.0.43
InSilicoSpectro::Databanks::DBEntry fasta databank entry + header's annotated info      
InSilicoSpectro::Databanks::DBEntryUniprot Uniprot formated entry      

Documentation

InSilico::Databanks::DBEntry fasta databank entry + header's annotated info  
cgiUniprotEntry.pl cgi scripts to grep a uniprot AC and print a fasta with derivated sequence  
fasta-decoy.pl decoy input databanks following several moethods  
fasta-shuffle-notryptic.pl shuffle each sequence, without any original tryptic peptide  
ncbinr2phenyxfasta.pl tranfoorm ncbirn bank into fasta with annotated headers  
uniprotdat2fasta.pl converts uniprot native text format (.dat or .seq) into fasta file, reporting varsplic, signal, peptide, PTM, conflicts....