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Alexandre Masselot > InSilicoSpectro > InSilicoSpectro::InSilico::TermIonSeries

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NAME ^

TermIonSeries - Perl class to represent N-/C-terminal fragment ion series.

SYNOPSIS ^

use InSilicoSpectro::InSilico::TermIonSeries

DESCRIPTION ^

This class inherits from IonSeries and just adds two new attributes for keeping track of the orientation and the series (a,b,c,x,y,z).

ATTRIBUTES ^

series

The generic series for these ions, i.e. the generic series for y++ and y-NH3 is y.

terminus

Equals 'C' or 'N';

METHODS ^

new([%h|$TermIonSeries])

Constructor. %h is a hash of attribute=>value pairs, $TermIonSeries is a InSilicoSpectro::InSilico::TermIonSeries object, from which the attributes are copied.

series([$s])

Accessor/modifier of the attribute series.

terminus([$s])

Accessor/modifier of the attribute terminus.

EXAMPLES ^

See t/InSilico/testCalcFragOOP.pl.

AUTHORS ^

Jacques Colinge, Upper Austria University of Applied Science at Hagenberg

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