General framework for ms spectra
Set or get the source file (where the data is)
Set or get the original file (where the data was)
Set or get the source file format
Set or get the title
Set or get the defaultCharge
set a name/value for sample info
get a sampleinfo value
set to 1 (default) will activate the use of FileCached system
Copyright (C) 2004-2005 Geneva Bioinformatics www.genebio.com
This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License along with this library; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Alexandre Masselot, www.genebio.com
Alow opening data from various format
Reads the spectra from $this->source , with type from $this{format}. If the latest is not defined, it will try to mgf ()
Try to guess the spectra format (if it is not yet defined) based on the file extension stores in the argument {source}. However, if you wish to load for example .dta file from a directory, it will not determine it automatically.
If the format was already specified, it will not try to guess it.
To allow charge incertitude, the package manage multi charges as on int. For example '2+ AND 3+' will be stored as (2^2+2^3)=12. Subroutines to convert string 2 chargeMask are exported as static (they do not belong to one particuliar spectra
To install InSilicoSpectro, copy and paste the appropriate command in to your terminal.
cpanm
cpanm InSilicoSpectro
CPAN shell
perl -MCPAN -e shell install InSilicoSpectro
For more information on module installation, please visit the detailed CPAN module installation guide.