nex2text_tree.pl - Trees as strings
nex2text_tree.pl [options] [file ...] nex2text_tree.pl --tree_width 100 --otu_spacing 4 --demo nex2text_tree.pl -i input.nex -o text_string_tree.out --tree_width 100 --otu_spacing 4
-d or --demo Prints out a default tree to the STDOUT -h or --help Brief help message about the options -m or --manual Full documentation -i or --input <file_name> Specify input NEXUS file -o or --output <file_name> Specify output file (default: STDOUT) -w or --tree_width 30 Total width of the output tree string (default = 30) [Integer] -s or --otu_spacing 4 Vertical spacing betweein OTUs (default value = 4) [Integer] -V or --version Print version information and quit --verbose The parameters are also printed along with the tree. -c or --cladogram normal The parameters are also printed along with the tree. (options: 'normal' or 'accelarated')
B<nex2text_tree.pl> prgram will read the given input NEXUS file and converts the newick tree in the TreesBlock as string.
Vivek Gopalan (gopalan_vivek@yahoo.com)
To install Bio::NEXUS, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::NEXUS
CPAN shell
perl -MCPAN -e shell install Bio::NEXUS
For more information on module installation, please visit the detailed CPAN module installation guide.