brian d foy > Dumbbench > Dumbbench

Download:
Dumbbench-0.09.tar.gz

Dependencies

Annotate this POD

CPAN RT

New  1
Open  2
View/Report Bugs
Module Version: 0.09   Source  

NAME ^

Dumbbench - More reliable benchmarking with the least amount of thinking

SYNOPSIS ^

Command line interface: (See dumbbench --help)

  dumbbench -p 0.005 -- ./testprogram --testprogramoption

This will start churning for a while and then prints something like:

  Ran 23 iterations of the command.
  Rejected 3 samples as outliers.
  Rounded run time per iteration: 9.519e-01 +/- 3.7e-03 (0.4%)

As a module:

  use Dumbbench;
  
  my $bench = Dumbbench->new(
    target_rel_precision => 0.005, # seek ~0.5%
    initial_runs         => 20,    # the higher the more reliable
  );
  $bench->add_instances(
    Dumbbench::Instance::Cmd->new(command => [qw(perl -e 'something')]), 
    Dumbbench::Instance::PerlEval->new(code => 'for(1..1e7){something}'),
    Dumbbench::Instance::PerlSub->new(code => sub {for(1..1e7){something}}),
  );
  # (Note: Comparing the run of externals commands with
  #  evals/subs probably isn't reliable)
  $bench->run;
  $bench->report;

DESCRIPTION ^

This module attempts to implement reasonably robust benchmarking with little extra effort and expertise required from the user. That is to say, benchmarking using this module is likely an improvement over

  time some-command --to --benchmark

or

  use Benchmark qw/timethis/;
  timethis(1000, 'system("some-command", ...)');

The module currently works similar to the former command line, except (in layman terms) it will run the command many times, estimate the uncertainty of the result and keep iterating until a certain user-defined precision has been reached. Then, it calculates the resulting uncertainty and goes through some pain to discard bad runs and subtract overhead from the timings. The reported timing includes an uncertainty, so that multiple benchmarks can more easily be compared.

Please note that Dumbbench works entirely with wallclock time as reported by Time::HiRes' time() function.

METHODS ^

In addition to the methods listed here, there are read-only accessors for all named arguments of the constructor (which are also object attributes).

new

Constructor that takes the following arguments (with defaults):

  verbosity            => 0,     # 0, 1, or 2
  target_rel_precision => 0.05,  # 5% target precision
  target_abs_precision => 0,     # no target absolute precision (in s)
  intial_runs          => 20,    # no. of guaranteed initial runs
  max_iterations       => 10000, # hard max. no of iterations
  variability_measure  => 'mad', # method for calculating uncertainty
  outlier_rejection    => 3,     # no. of "sigma"s for the outlier rejection

variability_measure and outlier_rejection probably make sense after reading HOW IT WORKS below.

add_instances

Takes one ore more instances of subclasses of Dumbbench::Instance as argument. Each of those is one benchmark, really. They are run in sequence and reported separately.

Right now, there are the following Dumbbench::Instance implementations: Dumbbench::Instance::Cmd for running/benchmarking external commands, Dumbbench::Instance::PerlEval for running/benchmarking Perl code in this same process using eval, and Dumbbench::Instance::PerlSub for running/benchmarking Perl code in this same process using a subroutine reference.

run

Runs the dry-run and benchmark run.

report

Prints a short report about the benchmark results.

instances

Returns a list of all instance objects in this benchmark set. The instance objects each have a result() and dry_result() method for accessing the numeric benchmark results.

HOW IT WORKS AND WHY IT DOESN'T ^

Why it doesn't work and why we try regardless

Recall that the goal is to obtain a reliable estimate of the run-time of a certain operation or command. Now, please realize that this is impossible since the run-time of an operation may depend on many things that can change rapidly: Modern CPUs change their frequency dynamically depending on load. CPU caches may be invalidated at odd moments and page faults provide less fine-grained distration. Naturally, OS kernels will do weird things just to spite you. It's almost hopeless.

Since people (you, I, everybody!) insist on benchmarking anyway, this is a best-effort at estimating the run-time. Naturally, it includes estimating the uncertainty of the run time. This is extremely important for comparing multiple benchmarks and that is usually the ultimate goal. In order to get an estimate of the expectation value and its uncertainty, we need a model of the underlying distribution:

A model for timing results

Let's take a step back and think about how the run-time of multiple invocations of the same code will be distributed. Having a qualitative idea what the distribution of many (MANY) measurements looks like is extremely important for estimating the expectation value and uncertainty from a sample of few measurements.

In a perfect, deterministic, single-tasking computer, we will get N times the exact same timing. In the real world, there are at least a million ways that this assumption is broken on a small scale. For each run, the load of the computer will be slightly different. The content of main memory and CPU caches may differ. All of these small effects will make a given run a tiny bit slower or faster than any other. Thankfully, this is a case where statistics (more precisely the Central Limit Theorem) provides us with the qualitative result: The measurements will be normally distributed (i.e. following a Gaussian distribution) around some expectation value (which happens to be the mean in this case). Good. Unfortunately, benchmarks are more evil than that. In addition to the small-scale effects that smear the result, there are things that (at the given run time of the benchmark) may be large enough to cause a large jump in run time. Assuming these are comparatively rare and typically cause extraordinarily long run-times (as opposed to extraordinarily low run-times), we arrive at an overall model of having a central, smooth-ish normal distribution with a few outliers towards long run-times.

So in this model, if we perform N measurements, almost all N times will be close to the expectation value and a fraction will be significantly higher. This is troublesome because the outliers create a bias in the uncertainty estimation and the asymmetry of the overall distribution will bias a simple calculation of the mean.

What we would like to report to the user is the mean and uncertainty of the main distribution while ignoring the outliers.

A robust estimation of the expectation value

Given the previously discussed model, we estimate the expectation value with the following algorithm:

1)

Calculate the median of the whole distribution. The median is a fairly robust estimator of the expectation value with respect to outliers (assuming they're comparatively rare).

2)

Calculate the median-absolute-deviation from the whole distribution (MAD, see wikipedia). The MAD needs rescaling to become a measure of variability. The MAD will be our initial guess for an uncertainty. Like the median, it is quite robust against outliers.

3)

We use the median and MAD to remove the tails of our distribution. All timings that deviate from the median by more than $X times the MAD are rejected. This measure should cut outliers without introducing much bias both in symmetric and asymmetric source distributions.

An alternative would be to use an ordinary truncated mean (that is the mean of all timings while disregarding the $N largest and $N smallest results). But the truncated mean can produce a biased result in asymmetric source distributions. The resulting expectation value would be artificially increased.

In summary: Using the median as the initial guess for the expectation value and the MAD as the guess for the variability keeps the bias down in the general case.

4)

Finally, the use the mean of the truncated distribution as the expectation value and the MAD of the truncated distribution as a measure of variability. To get the uncertainty on the expectation value, we take MAD / sqrt($N) where $N is the number of remaining measurements.

Conclusion

I hope I could convince you that interpreting less sophisticated benchmarks is a dangerous if not futile exercise. The reason this module exists is that not everybody is willing to go through such contortions to arrive at a reliable conclusion, but everybody loves benchmarking. So let's at least get the basics right. Do not compare raw timings of meaningless benchmarks but robust estimates of the run time of meaningless benchmarks instead.

SEE ALSO ^

Dumbbench::Instance, Dumbbench::Instance::Cmd, Dumbbench::Instance::PerlEval, Dumbbench::Instance::PerlSub, Dumbbench::Result

Benchmark

Number::WithError does the Gaussian error propagation.

http://en.wikipedia.org/wiki/Median_absolute_deviation

AUTHOR ^

Steffen Mueller, <smueller@cpan.org>

COPYRIGHT AND LICENSE ^

Copyright (C) 2010, 2011, 2012 by Steffen Mueller

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.1 or, at your option, any later version of Perl 5 you may have available.

syntax highlighting: