GH/Align/.gdbinit
GH/Align/Align.pm
GH/Align/Align.xs
GH/Align/Makefile.PL
GH/Align/align_bounded_hirsch.c
GH/Align/align_bounded_hirsch.h
GH/Align/align_context.c
GH/Align/align_context.h
GH/Align/align_helpers.c
GH/Align/align_helpers.h
GH/Align/align_tools.c
GH/Align/t/1.globalmindifferences.t
GH/Align/t/10.hirshenberg.t
GH/Align/t/5.boundedglobalmindifferences.t
GH/Align/t/D287
GH/Align/t/D287.hacked
GH/Align/t/D861
GH/Align/t/D861.hacked
GH/EditOp/EditOp.pm
GH/EditOp/EditOp.xs
GH/EditOp/Makefile.PL
GH/EditOp/editop.c
GH/EditOp/editop.h
GH/EditOp/t/editop.t
GH/EditOp/typemap
GH/Makefile.PL
GH/Msp/Changes
GH/Msp/Makefile.PL
GH/Msp/Msp.pm
GH/Msp/Msp.xs
GH/Msp/msp.c
GH/Msp/msp.h
GH/Msp/t/msp.t
GH/Msp/typemap
GH/MspTools/.gdbinit
GH/MspTools/Changes
GH/MspTools/Makefile.PL
GH/MspTools/MspTools.pm
GH/MspTools/MspTools.xs
GH/MspTools/msp_helpers.c
GH/MspTools/msp_helpers.h
GH/MspTools/msp_tools.c
GH/MspTools/msp_tools.h
GH/MspTools/t/1.getmsps.t
GH/MspTools/t/2.findbestoverlap.t
GH/MspTools/t/2L_466717_649302.fst
GH/MspTools/t/3.findbestinclusion.t
GH/MspTools/t/4.findbestinclusionbulk.t
GH/MspTools/t/5.getmspsbulk.t
GH/MspTools/t/D287
GH/MspTools/t/D843Celera.fasta
GH/MspTools/t/D861
GH/MspTools/t/DS00960.seq
GH/MspTools/t/DS08018.seq
GH/MspTools/t/poodle1
GH/MspTools/t/poodle2
GH/MspTools/typemap
GH/Sim4/.gdbinit
GH/Sim4/Makefile.PL
GH/Sim4/Sim4.pm
GH/Sim4/Sim4.xs
GH/Sim4/TAGS
GH/Sim4/sim4.2002-03-03/COPYRIGHT
GH/Sim4/sim4.2002-03-03/INSTALL
GH/Sim4/sim4.2002-03-03/Makefile
GH/Sim4/sim4.2002-03-03/Makefile,v
GH/Sim4/sim4.2002-03-03/README.psublast
GH/Sim4/sim4.2002-03-03/README.sim4
GH/Sim4/sim4.2002-03-03/VERSION
GH/Sim4/sim4.2002-03-03/Xtend1.c
GH/Sim4/sim4.2002-03-03/Xtend1.h
GH/Sim4/sim4.2002-03-03/align.c
GH/Sim4/sim4.2002-03-03/align.h
GH/Sim4/sim4.2002-03-03/args.c
GH/Sim4/sim4.2002-03-03/args.h
GH/Sim4/sim4.2002-03-03/charvec.c
GH/Sim4/sim4.2002-03-03/charvec.h
GH/Sim4/sim4.2002-03-03/discrim.c
GH/Sim4/sim4.2002-03-03/discrim.h
GH/Sim4/sim4.2002-03-03/dna.c
GH/Sim4/sim4.2002-03-03/dna.h
GH/Sim4/sim4.2002-03-03/encoding.c
GH/Sim4/sim4.2002-03-03/encoding.h
GH/Sim4/sim4.2002-03-03/libc.h
GH/Sim4/sim4.2002-03-03/misc.c
GH/Sim4/sim4.2002-03-03/misc.h
GH/Sim4/sim4.2002-03-03/poly.c
GH/Sim4/sim4.2002-03-03/poly.h
GH/Sim4/sim4.2002-03-03/prnt.c
GH/Sim4/sim4.2002-03-03/prnt.h
GH/Sim4/sim4.2002-03-03/psublast.h
GH/Sim4/sim4.2002-03-03/seq.c
GH/Sim4/sim4.2002-03-03/seq.h
GH/Sim4/sim4.2002-03-03/seq_read.c
GH/Sim4/sim4.2002-03-03/sim4.h
GH/Sim4/sim4.2002-03-03/sim4.init.c
GH/Sim4/sim4.2002-03-03/sim4b1.c
GH/Sim4/sim4.2002-03-03/sim4b1.h
GH/Sim4/sim4.2002-03-03/splice.c
GH/Sim4/sim4.2002-03-03/splice.h
GH/Sim4/sim4.2002-03-03/types.h
GH/Sim4/sim4_helpers.c
GH/Sim4/sim4_helpers.h
GH/Sim4/t/cDNA-1-rev.fasta
GH/Sim4/t/cDNA-1.fasta
GH/Sim4/t/cDNA-2-rev.fasta
GH/Sim4/t/cDNA-2.fasta
GH/Sim4/t/error-handling.t
GH/Sim4/t/genomic-1.fasta
GH/Sim4/t/genomic-2.fasta
GH/Sim4/t/sim4.t
GH/Status/Makefile.PL
GH/Status/Status.pm
GH/Status/Status.xs
GH/Status/status.h
GH/Status/t/status.t
MANIFEST
MANIFEST.bak
Makefile.PL
README
utils/.gdbinit
utils/Makefile.PL
utils/overlap
utils/place-bac-ends
utils/revcomp
utils/t/3R.4
utils/t/3R.7
utils/t/BACR01A03-T7
utils/t/BACR01A03-TET3
utils/t/BACR02B03-T7
utils/t/BACR02B03-TET3
utils/t/BACR02B19-T7
utils/t/BACR02B19-TET3
utils/t/BACR06G02-T7
utils/t/BACR06G02-TET3
utils/t/BACR22I24-T7
utils/t/BACR22I24-TET3
utils/t/BACR33D04-T7
utils/t/BACR33D04-TET3
utils/t/D1113Celera.fasta
utils/t/D1114Celera.fasta
utils/t/X.2
utils/t/X.4
utils/t/X.7
utils/t/aaa.fasta
utils/t/overlap.t
utils/t/place-bac-ends.t
utils/t/test1.fasta
utils/t/test1a.fasta
utils/t/test1b.fasta
utils/t/test1c.fasta
utils/t/test1d.fasta
utils/t/test1e.fasta
utils/t/test1f.fasta
utils/t/test2.fasta
utils/t/test2a.fasta
utils/t/test2b.fasta
utils/t/test2c.fasta
utils/t/test2d.fasta
utils/t/ttt.fasta
META.yml                                Module meta-data in YAML
META.json                                Module JSON meta-data (added by MakeMaker)