Bio::Align::StatisticsI - Calculate some statistics for an alignment
Give standard usage here
Describe the interface here
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : distance
Usage : my $distance_mat = $stats->distance(-align => $aln,
-method => $method);
Function: Calculates a distance matrix for all pairwise distances of
sequences in an alignment.
Returns : Array ref
Args : -align => Bio::Align::AlignI object
-method => String specifying specific distance method
(implementing class may assume a default)
Title : available_distance_methods Usage : my @methods = $stats->available_distance_methods(); Function: Enumerates the possible distance methods Returns : Array of strings Args : none
