NAME

Bio::Tools::Run::PiseApplication::stssearch

SYNOPSIS

DESCRIPTION

Bio::Tools::Run::PiseApplication::stssearch

      Bioperl class for:

        STSSEARCH       Searches a DNA database for matches with a set of STS primers (EMBOSS)


      Parameters: 

        (see also:
          http://bioweb.pasteur.fr/seqanal/interfaces/stssearch.html 
         for available values):


                stssearch (String)

                init (String)

                sequences (Sequence)
                        sequences -- dna [sequences] (-sequences)
                        pipe: seqsfile

                primers (InFile)
                        Primer file (-primers)

                out (OutFile)
                        out (-out)

                auto (String)

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org              - General discussion
  http://bioperl.org/MailList.shtml  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:

  bioperl-bugs@bioperl.org
  http://bioperl.org/bioperl-bugs/

AUTHOR

Catherine Letondal (letondal@pasteur.fr)

COPYRIGHT

This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

DISCLAIMER

This software is provided "as is" without warranty of any kind.

 Title   : new()
 Usage   : my $stssearch = Bio::Tools::Run::PiseApplication::stssearch->new($location, $email, @params);
 Function: Creates a Bio::Tools::Run::PiseApplication::stssearch object.
           This method should not be used directly, but rather by 
           a Bio::Tools::Run::AnalysisFactory::Pise instance.
           my $factory = Bio::Tools::Run::AnalysisFactory::Pise->new();
           my $stssearch = $factory->program('stssearch');
 Example : -
 Returns : An instance of Bio::Tools::Run::PiseApplication::stssearch.

CPAN RT