Bio::Align::PairwiseStatistics - Base statistic object for Pairwise Alignments
Give standard usage here
Describe the object here
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/MailList.shtml - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:
bioperl-bugs@bioperl.org http://bugzilla.bioperl.org/
Email jason@bioperl.org
Describe contact details here
Additional contributors names and emails here
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : number_of_comparable_bases
Usage : my $bases = $stat->number_of_comparable_bases($aln);
Function: Returns the count of the number of bases that can be
compared (L) in this alignment ( length - gaps)
Returns : integer
Args : Bio::Align::AlignI
Title : number_of_differences Usage : my $nd = $stat->number_of_distances($aln); Function: Returns the number of differences between two Returns : integer Args : Bio::Align::AlignI
Title : number_of_gaps Usage : my $nd = $stat->number_of_gaps($aln); Function: Returns the number of differences between two Example : Returns : Args :
