Bridget McInnes > UMLS-Similarity-1.41 > spearmans.pl

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NAME ^

spearmans.pl - This program calculates Spearman's Rank Correlation between two datasets.

SYNOPSIS ^

This utility takes two files in the format of umls-similarity.pl output and calculates the Spearman's Rank Correlation.

USAGE ^

Usage: spearmans.pl [OPTIONS] FILE1 FILE2

INPUT ^

FILE1 FILE2

Two files in the following format:

score<>CUI1<>CUI2 score<>CUI3<>CUI4 ect ...

The output format of umls-similarity.pl will work here because it extracts the CUIs from the paranthesis, so no worries. If you are not using the CUI format or a umls-similarity.pl output file though, use the --word option described below.

Optional Arguments: ^

Displays the quick summary of program options.

--word

The format of the input files contains words rather than CUIs and/or is not a umls-similarity.pl output file.

--N

displays N - the number of term pairs the correlation is being calculated over. This would be any term pair that has a score greater than or equal to zero.

--precision NUMBER

Displays values up to NUMBER places of decimal. Default is 4.

--version

Displays the version information.

OUTPUT ^

The Spearman's Rank Correlation between the two files.

SYSTEM REQUIREMENTS ^

CONTACT US ^

  If you have any trouble installing and using UMLS-Similarity, 
  please contact us via the users mailing list :
    
      umls-similarity@yahoogroups.com
     
  You can join this group by going to:
    
      http://tech.groups.yahoo.com/group/umls-similarity/
     
  You may also contact us directly if you prefer :
    
      Bridget T. McInnes: bthomson at cs.umn.edu 

      Ted Pedersen : tpederse at d.umn.edu

AUTHOR ^

 Bridget T. McInnes, University of Minnesota

COPYRIGHT ^

Copyright (c) 2007-2011,

 Bridget T. McInnes, University of Minnesota
 bthomson at cs.umn.edu
    
 Ted Pedersen, University of Minnesota Duluth
 tpederse at d.umn.edu


 Siddharth Patwardhan, University of Utah, Salt Lake City
 sidd@cs.utah.edu
 
 Serguei Pakhomov, University of Minnesota Twin Cities
 pakh0002@umn.edu

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program; if not, write to:

 The Free Software Foundation, Inc.,
 59 Temple Place - Suite 330,
 Boston, MA  02111-1307, USA.
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