Carnë Draug > Bio-Biblio-1.70 > Bio::Biblio::IO::medline2ref

Download:
Bio-Biblio-1.70.tar.gz

Dependencies

Annotate this POD

Website

View/Report Bugs
Module Version: 1.70   Source  

NAME ^

Bio::Biblio::IO::medline2ref - a converter of a raw hash to MEDLINE citations

VERSION ^

version 1.70

SYNOPSIS ^

 # to be written

DESCRIPTION ^

 # to be written

METHODS ^

new

convert

INTERNAL METHODS ^

_load_instance

_new_instance

Load a module (given as a real module name, e.g. 'Bio::Biblio::MedlineJournalArticle'), call new() method on it, and return the instance returned by the new() method

_convert_date

See OpenBQS specification (http://www.ebi.ac.uk/~senger/openbqs/) how a date should be coded; TBD: this can be improved - checking is missing, timezones, converting to UTC... Also note that this routine does not convert 'medline_date' - it is stored in a separate attribute without ant conversion.

_convert_personal_name

$person is a hash with persons attributes - we need to create and return a Bio::Biblio::Person object

_convert_journal_article

Takes journal article related attributes from $article and convert them into $result and at the end call _convert_article (which is shared with book article)

_convert_book_article

Takes book article related attributes from $article and convert them into $result and at the end call _convert_article (which is shared with journal article)

_convert_article

Takes from $source article related attributes and convert them into $article (these attributes are the same both for journal and book articles

_convert_providers

Takes a ref-array of providers - they can be persons or organisations, and returns an array of converted providers

FEEDBACK ^

Mailing lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://redmine.open-bio.org/projects/bioperl/

LEGAL ^

Authors

Martin Senger <senger@ebi.ac.uk>

Copyright and License

This software is Copyright (c) by 2002 European Bioinformatics Institute and released under the license of the same terms as the perl 5 programming language system itself

syntax highlighting: