Bio::Biblio::BiblioBase - an abstract base for other biblio classes
version 1.70
# do not instantiate this class directly
It is a base class where all other biblio data storage classes inherit from. It does not reflect any real-world object, it exists only for convenience, in order to have a place for shared code.
All attribute names can be used as method names. When used without any parameter the method returns current value of the attribute (or undef), when used with a value the method sets the attribute to this value and also returns it back. The set method also checks if the type of the new value is correct.
If there is a need for new attributes, create your own class which usually inherits from Bio::Biblio::Ref. For new types of providers and journals, let your class inherit directly from this Bio::Biblio::BiblioBase class.
The new() class method constructs a new biblio storage object. It accepts list of named arguments - the same names as attribute names prefixed with a minus sign. Available attribute names are listed in the documentation of the individual biblio storage objects.
This method should not be called here; it should be implemented by a subclass
Deal with 'set_' and 'get_' methods
Set methods test whether incoming value is of a correct type; here we return message explaining it
Probably just for debugging TBD: to decide...
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
https://redmine.open-bio.org/projects/bioperl/
Martin Senger <senger@ebi.ac.uk>
This software is Copyright (c) by 2002 European Bioinformatics Institute and released under the license of the same terms as the perl 5 programming language system itself
To install Bio::Biblio, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Biblio
CPAN shell
perl -MCPAN -e shell install Bio::Biblio
For more information on module installation, please visit the detailed CPAN module installation guide.