Christopher Fields > Bio-EUtilities-1.73

Bio-EUtilities-1.73

This Release Bio-EUtilities-1.73  [Download] [Browse 08 Sep 2013
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Repository git://github.com/bioperl/bio-eutilities.git - Website
CPAN Testers PASS (57)   [ View Reports ] [ Perl/Platform Version Matrix ]
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License The Perl 5 License (Artistic 1 & GPL 1)
Special Files
Changes
LICENSE
Makefile.PL
MANIFEST
META.json

Modules

Bio::DB::EUtilities Webagent which interacts with and retrieves data from NCBI's eUtils.     1.73
Bio::Tools::EUtilities NCBI eutil XML parsers.     1.73
Bio::Tools::EUtilities::EUtilDataI EUtil data object interface.     1.73
Bio::Tools::EUtilities::EUtilParameters Manipulation of NCBI eutil-based parameters for remote database requests.     1.73
Bio::Tools::EUtilities::History Lightweight implementation of HistoryI interface (not bound to filehandles, extraneous methods, etc).     1.73
Bio::Tools::EUtilities::HistoryI Simple extension of EUtilDataI interface class for classes which hold NCBI server history data.     1.73
Bio::Tools::EUtilities::Info Interface class for storing einfo data.     1.73
Bio::Tools::EUtilities::Info::FieldInfo Class for storing einfo field data.     1.73
Bio::Tools::EUtilities::Info::LinkInfo Class for storing einfo link data.     1.73
Bio::Tools::EUtilities::Link General API for accessing data retrieved from elink queries.     1.73
Bio::Tools::EUtilities::Link::LinkSet Class for EUtils LinkSets.     1.73
Bio::Tools::EUtilities::Link::UrlLink Class for EUtils UrlLinks.     1.73
Bio::Tools::EUtilities::Query Parse and collect esearch, epost, espell, egquery information.     1.73
Bio::Tools::EUtilities::Query::GlobalQuery Container class for egquery data.     1.73
Bio::Tools::EUtilities::Summary Class for handling data output (XML) from esummary.     1.73
Bio::Tools::EUtilities::Summary::DocSum Data object for document summary data from esummary.     1.73
Bio::Tools::EUtilities::Summary::Item Simple layered object for DocSum item data.     1.73
Bio::Tools::EUtilities::Summary::ItemContainerI Abtract interface methods for accessing Item information from any Item-containing class. This pertains to either DocSums or to Items themselves (which can be layered).     1.73

Documentation

bp_einfo.pl query einfo to find all available databases or information about a specific database (field information or links to other NCBI databases)  
bp_genbank_ref_extractor retrieves all related sequences for a list of searches on Entrez gene