Bio::TreeIO::nhx - TreeIO implementation for parsing Newick/New Hampshire eXtendend (NHX) format.
# do not use this module directly use Bio::TreeIO; my $treeio = Bio::TreeIO->new(-format => 'nhx', -file => 'tree.dnd'); my $tree = $treeio->next_tree;
This module handles parsing and writing of Newick/New Hampshire eXtended (NHX) format.
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : next_tree Usage : my $tree = $treeio->next_tree Function: Gets the next tree in the stream Returns : Bio::Tree::TreeI Args : none
Title : write_tree Usage : $treeio->write_tree($tree); Function: Write a tree out to data stream in nhx format Returns : none Args : Bio::Tree::TreeI object
To install BioPerl, copy and paste the appropriate command in to your terminal.
cpanm
cpanm BioPerl
CPAN shell
perl -MCPAN -e shell install BioPerl
For more information on module installation, please visit the detailed CPAN module installation guide.