Christopher Fields > BioPerl-1.6.901 > reverse-translate.pl

Download:
BioPerl-1.6.901.tar.gz

Annotate this POD

CPAN RT

New  9
Open  4
View/Report Bugs
Source   Latest Release: BioPerl-1.6.923

NAME ^

reverse-translate.pl

DESCRIPTION ^

Reverse-translates a nucleotide sequence using the most frequent codons. Requires an input sequence file and a nucleotide sequence file containing one sequence comprised of one or more ORFs. This file supplies the codon frequency data and will be parsed starting at the first triplet in the sequence.

OPTIONS ^

  -i   Input sequence, amino acid
  -c   Input sequence, nucleotide ORFs

Example:

 reverse-translate.pl -i ~/bioperl-live/t/data/cysprot.fa -c ~/bioperl-live/t/data/HUMBETGLOA.fa 
syntax highlighting: