split_seq - splits a sequence into equal sized chunks with an optional overlapping range
split_seq -c 10000 [-o 1000] [-i] -f seq.in
The script will split sequences into chunks
-c Desired length of the resulting sequences. -f Input file (must be FASTA format).
-o Overlapping range between the resulting sequences. -i Create an index file with the resulting sequence files. This is useful if you want to pass this list as input arguments into another programs (i.e. CLUSTAL, HMMER, etc.).
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Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt> Mauricio Herrera Cuadra E<lt>mauricio at open-bio.orgE<gt> (some enhancements)