split_seq - splits a sequence into equal sized chunks with an optional overlapping range
split_seq -c 10000 [-o 1000] [-i] -f seq.in
The script will split sequences into chunks
Mandatory Options:
-c Desired length of the resulting sequences. -f Input file (must be FASTA format).
Special Options:
-o Overlapping range between the resulting sequences.
-i Create an index file with the resulting sequence files. This is
useful if you want to pass this list as input arguments into
another programs (i.e. CLUSTAL, HMMER, etc.).
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
https://redmine.open-bio.org/projects/bioperl/
Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt> Mauricio Herrera Cuadra E<lt>mauricio at open-bio.orgE<gt> (some enhancements)
