Christopher Fields > BioPerl-1.6.920 > Bio::DB::SeqVersion

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Module Version: 1.006920   Source   Latest Release: BioPerl-1.6.923

NAME ^

Bio::DB::SeqVersion - front end to querying databases for identifier versions

SYNOPSIS ^

  use Bio::DB::SeqVersion;

  my $query = Bio::DB::SeqVersion->new(-type => 'gi');

  my @all_gis = $query->get_all(2);

  my $live_gi = $query->get_recent(2);

DESCRIPTION ^

The default type is 'gi'.

FEEDBACK ^

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Brian Osborne ^

Email bosborne at alum.mit.edu

CONTRIBUTORS ^

Torsten Seemann - torsten.seemann AT infotech.monash.edu.au

APPENDIX ^

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new()

 Usage   : my $obj = Bio::DB::SeqVersion->new();
 Function: Create a Bio::DB::SeqVersion object 
 Returns : An instance of Bio::DB::SeqVersion
 Args    : -type      Identifier namespace, default is 'gi' 

get_recent()

 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

get_all()

 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

_load_seqversion_module

 Title   : _load_seqversion_module
 Usage   : Used internally
 Function: Loads up a module at run time on demand
 Example :
 Returns :
 Args    : Name of identifier type

default_id_type

 Title   : default_id_type
 Usage   : my $type = $self->default_id_type
 Function: Returns default identifier type for this module
 Returns : string
 Args    : none
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