Christopher Fields > BioPerl-1.6.920 > Bio::Search::Hit::Fasta

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Module Version: 1.006920   Source   Latest Release: BioPerl-1.6.924

NAME ^

Bio::Search::Hit::Fasta - Hit object specific for Fasta-generated hits

SYNOPSIS ^

  # You wouldn't normally create these manually; 
  # instead they would be produced by Bio::SearchIO::fasta

  use Bio::Search::Hit::Fasta;
  my $hit = Bio::Search::Hit::Fasta->new(id=>'LBL_6321', desc=>'lipoprotein', e_val=>0.01);

DESCRIPTION ^

Bio::Search::Hit::HitI objects are data structures that contain information about specific hits obtained during a library search. Some information will be algorithm-specific, but others will be generally defined, such as the ability to obtain alignment objects corresponding to each hit.

SEE ALSO ^

Bio::Search::Hit::HitI, Bio::Search::Hit::GenericHit, Bio::SearchIO::fasta.

FEEDBACK ^

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:

  https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Aaron Mackey ^

Email amackey-at-virginia.edu

APPENDIX ^

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

_initialize

 Function: where the heavy stuff will happen when new is called

AUTOLOAD

 Function: Provide getter/setters for ID,DESC,SIZE,INITN,INIT1,OPT,ZSC,E_VAL
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