Christopher Fields > BioPerl-1.6.920 > waba2gff3.pl

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NAME ^

waba2gff3.pl - convert waba output into GFF3 suitable for Gbrowse

DESCRIPTION ^

This script turns WABA output into GFF3 output for the query sequence. If you need to get this where the Hit sequence is the reference sequence you'll want to flip-flop the code to use hit instead of query. I didn't try and make it that general yet.

I don't (yet) know how the 'score' field is calculate by Wormbase folks for WABA data in their GFF dumps. I'm checking on that but it shouldn't make a difference for Gbrowse.

AUTHOR ^

Jason Stajich, jason-at-bioperl-dot-org Duke University,

LICENSE ^

This script is available under the Perl Artistic License meaning you can do with it what you wish.

Please do tell me about bugs or improvements so I can roll those back in for other people to use.

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