dependencies.pl - check modules and scripts for dependencies not in core
dependencies.pl [--dir path ] [-v|--verbose] [--depfile file] [-?|-h|--help] [-p|--perl version]
Recursively parses directory tree given (defaults to '../Bio') and checks files for possible dependencies and versions (use/require statements). Checks that modules aren't part of perl core (--version, defaults to 5.006001). Module information is returned using CPANPLUS and data is output to a table using Perl6::Form (yes I managed to get perl6 in here somehow).
Requires:
File::Find - core Getopt::Long - core CPANPLUS::Backend Perl6::Form Module::CoreList
Overides the default directories to check by one directory 'path' and all its subdirectories.
The name of the output file for the dependencies table. Default is '../DEPENDENCIES.NEW'
Show the progress through files during the checking. Not used currently.
Perl version (in long form, i.e. 5.010, 5.006001). Used to weed out the core modules that should be already present (ActiveState, we're staring at you sternly).
Skips BioPerl-related modules in DEPENDENCIES.
We may add something in the future to allow other forms.
This help text.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
https://redmine.open-bio.org/projects/bioperl/
Email cjfields-at-bioperl-dot-org
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.