Christopher Fields > BioPerl-1.6.920 > bp_meta_gff.pl

Download:
BioPerl-1.6.920.tar.gz

Annotate this POD

CPAN RT

New  9
Open  4
View/Report Bugs
Source   Latest Release: BioPerl-1.6.924

NAME ^

bp_meta_gff.pl - Get/set Bio::DB::GFF meta-data

SYNOPSIS ^

  # set the following meta data values
  % bp_meta_gff.pl -d testdb tag1=value1 tag2=value2

  # get the indicated meta data value
  % bp_meta_gff.pl -d testdb tag1 tag2

DESCRIPTION ^

This script gets or sets metadata in a Bio::DB::GFF database. Not all adaptors support this operation! To set a series of tags, pass a set of tag=value pairs to the script. To get the contents of a series of tags, pass the bare tag names.

The output from the get operation will be an easily parseable set of tag=value pairs, one per line.

COMMAND-LINE OPTIONS ^

Command-line options can be abbreviated to single-letter options. e.g. -d instead of --database.

   --database <dsn>      Mysql database name (default dbi:mysql:test)
   --adaptor <adaptor>   Mysql adaptor (default dbi::mysqlopt)
   --user    <user>      Username for mysql authentication
   --pass    <password>  Password for mysql authentication

SEE ALSO ^

Bio::DB::GFF

AUTHOR ^

Lincoln Stein, lstein@cshl.org

Copyright (c) 2002 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

syntax highlighting: