Christopher Fields > BioPerl-1.6.920 > bp_gccalc

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Source   Latest Release: BioPerl-1.6.924

NAME ^

bp_gccalc - GC content of nucleotide sequences

SYNOPSIS ^

  bp_gccalc [-f/--format FORMAT] [-h/--help] filename
  or
  bp_gccalc [-f/--format FORMAT] < filename
  or
  bp_gccalc [-f/--format FORMAT] -i filename

DESCRIPTION ^

This scripts prints out the GC content for every nucleotide sequence from the input file.

OPTIONS ^

The default sequence format is fasta.

The sequence input can be provided using any of the three methods:

unnamed argument
  bp_gccalc filename
named argument
  bp_gccalc -i filename
standard input
  bp_gccalc < filename

FEEDBACK ^

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Jason Stajich ^

Email jason@bioperl.org

HISTORY ^

Based on script code (see bottom) submitted by cckim@stanford.edu

Submitted as part of bioperl script project 2001/08/06

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