Bio::Align::StatisticsI - Calculate some statistics for an alignment
Give standard usage here
Describe the interface here
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : distance Usage : my $distance_mat = $stats->distance(-align => $aln, -method => $method); Function: Calculates a distance matrix for all pairwise distances of sequences in an alignment. Returns : Array ref Args : -align => Bio::Align::AlignI object -method => String specifying specific distance method (implementing class may assume a default)
Title : available_distance_methods Usage : my @methods = $stats->available_distance_methods(); Function: Enumerates the possible distance methods Returns : Array of strings Args : none