Christopher Fields > BioPerl-1.6.922 > Bio::Factory::LocationFactoryI

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Module Version: 1.006922   Source   Latest Release: BioPerl-1.6.924

NAME ^

Bio::Factory::LocationFactoryI - A factory interface for generating locations from a string

SYNOPSIS ^

 # Do not use directly, see Bio::Factory::LocationFactory for example
 use Bio::Factory::FTLocationFactory;
 my $locfact = Bio::Factory::FTLocationFactory->new();
 my $location = $locfact->from_string("1..200");
 print $location->start(), " ", $location->end(), " ", $location->strand,"\n";

DESCRIPTION ^

An interface for Location Factories which generate Bio::LocationI objects from a string.

FEEDBACK ^

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Hilmar Lapp ^

Email hlapp at gmx.net

APPENDIX ^

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

from_string

 Title   : from_string
 Usage   : $loc = $locfactory->from_string("100..200");
 Function: Parses the given string and returns a Bio::LocationI implementing
           object representing the location encoded by the string.

           Different implementations may support different encodings. An
           example of a commonly used encoding is the Genbank feature table
           encoding of locations.
 Example :
 Returns : A Bio::LocationI implementing object.
 Args    : A string.
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