Christopher Fields > BioPerl-1.6.922 > Bio::LiveSeq::Prim_Transcript

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Module Version: 1.006922   Source   Latest Release: BioPerl-1.6.924

NAME ^

Bio::LiveSeq::Prim_Transcript - Prim_Transcript class for LiveSeq

SYNOPSIS ^

  # documentation needed

DESCRIPTION ^

Class for PRIM_TRANSCRIPT objects. They consist of a beginlabel, an endlabel (both referring to a LiveSeq DNA object) and a strand. The strand could be 1 (forward strand, default), -1 (reverse strand).

AUTHOR - Joseph A.L. Insana ^

Email: Insana@ebi.ac.uk, jinsana@gmx.net

APPENDIX ^

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

  Title   : new
  Usage   : $intron1=Bio::LiveSeq::Prim_Transcript->new(-seq => $objref,
                                                        -start => $startlabel,
                                                        -end => $endlabel, 
                                                        -strand => 1
                                                        );

  Function: generates a new Bio::LiveSeq::Prim_Transcript
  Returns : reference to a new object of class Prim_Transcript
  Errorcode -1
  Args    : two labels and an integer
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