bp_generate_histogram.pl -- Generate a histogram of Bio::DB::GFF features
bp_generate_histogram.pl -d gadfly variation gene:curated
Use this utility to generate feature density histograms from Bio::DB::GFF databases. The result is a GFF data file that is suitable for loading with load_gff.pl.
The following options are recognized:
Option Description ------ ----------- --dsn <dsn> Data source (default dbi:mysql:test) --adaptor <adaptor> Schema adaptor (default dbi::mysqlopt) --user <user> Username for mysql authentication --pass <password> Password for mysql authentication --aggregator <list> Comma-separated list of aggregators
Please report them.
Bio::DB::GFF
Lincoln Stein <lstein@cshl.org>
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.