bp_chaos_plot - a chaos plot from DNA and RNA sequences
bp_chaos_plot.pl -i/--input=INPUTFILE -f/--format=SEQFORMAT -o/--output=OUTPUTFILE -g/--graphics=GRAPHIC FORMAT -w/--width=WIGHT -h/--height=HEIGHT
This scripts generates image files using GD image library to visualize nucleotide sequences using chaos plot.
Valid graphics formats are currently gd, gd2, png, wbmp, jpeg and gif.
The default size of the image file is 600x400.
The sequence input can be provided using any of the three methods:
bp_chaos_plot -i filename
bp_chaos_plot < filename
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
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This code is based on EMBOSS C code for chaos.c by Ian Longden. Included are documentation from EMBOSS code:
Chaos produces a chaos plot. The original application is part of the ACEDB genome database package, written by ** Richard Durbin (MRC LMB, UK) firstname.lastname@example.org, and Jean Thierry-Mieg (CRBM du CNRS, France) email@example.com