Christopher Fields > BioPerl-1.6.923 > Bio::Map::LinkagePosition

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Source   Latest Release: BioPerl-1.6.924

NAME ^

Bio::Map::LinkagePosition - Create a Position for a Marker that will be placed on a Bio::Map::LinkageMap

SYNOPSIS ^

    use Bio::Map::Position;
    my $position = Bio::Map::LinkagePosition->new(-positions => 1,
                                                 -distance => 22.1 );

        # can get listing of positions
    my @positions = $position->each_position;

DESCRIPTION ^

Position for a Bio::Map::MarkerI compliant object that will be placed on a Bio::Map::LinkageMap. See Bio::Map::MarkerI and Bio::Map::LinkageMap for details

FEEDBACK ^

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Chad Matsalla ^

Email bioinformatics1@dieselwurks.com

CONTRIBUTORS ^

Lincoln Stein, lstein@cshl.org Heikki Lehvaslaiho, heikki-at-bioperl-dot-org Jason Stajich jason@bioperl.org Sendu Bala bix@sendu.me.uk

APPENDIX ^

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

 Title   : new
 Usage   : my $obj = Bio::Map::LinkagePosition->new(-positions => $position,
                                                                   -distance => $distance);
 Function: Builds a new Bio::Map::LinkagePosition object
 Returns : Bio::Map::LinkagePosition
 Args    : -order => the relative order of this marker on a linkage map
               -positions => positions on a map

Bio::Map::PositionI methods

order

 Title   : order
 Usage   : $o_position->order($order)
           my $order = $o_position->order()
 Function: get/set the order position of this position in a map
 Returns : int
 Args    : none to get, int to set
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