Christopher Fields > BioPerl-1.6.923 > Bio::Restriction::IO::prototype

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NAME ^

Bio::Restriction::IO::prototype - prototype enzyme set

SYNOPSIS ^

Do not use this module directly. Use it via the Bio::Restriction::IO class.

DESCRIPTION ^

This is a parser for the proto/neo file REBASE format, which contains prototype information as well as (in the neo file) neoschizomer data.

FEEDBACK ^

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing lists Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:

  https://redmine.open-bio.org/projects/bioperl/

AUTHOR ^

Rob Edwards, redwards@utmem.edu

CONTRIBUTORS ^

Heikki Lehvaslaiho, heikki-at-bioperl-dot-org

APPENDIX ^

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

read

 Title   : read
 Usage   : $renzs = $stream->read
 Function: reads all the restrction enzymes from the stream
 Returns : a Bio::Restriction::Restriction object
 Args    : none

write

 Title   : write
 Usage   : $stream->write($renzs)
 Function: writes restriction enzymes into the stream
 Returns : 1 for success and 0 for error
 Args    : a Bio::Restriction::Enzyme
           or a Bio::Restriction::EnzymeCollection object
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