Bio::SeqIO::game::gameHandler -- PerlSAX handler for game-XML
This modules is not used directly
Bio::SeqIO::game::gameHandler is the top-level XML handler invoked by PerlSAX
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists.
Your participation is much appreciated.
email@example.com - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : start_document Function: begin parsing the document
Title : end_document Function: finish parsing the document
Title : load Usage : $seqs = $handler->load Function: start parsing Returns : a ref to a list of sequence objects Args : an optional flag to supress <computation_analysis> elements (not used yet)
Title : s_game Function: begin parsing game element
Title : e_game Function: process the game element
Title : e_seq Function: process the sequence element
Title : e_map_position Function: process the map_position element
Title : e_annotation Function: process the annotation