Christopher Fields > BioPerl-1.6.923 > bp_seqretsplit

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Source   Latest Release: BioPerl-1.6.924

NAME ^

bp_seqretsplit - split a sequence (or stream) into a single file per sequence

SYNOPSIS ^

  bp_seqretsplit file1 file2 .. 
  # or
  bp_seqretsplit < file1 

DESCRIPTION ^

The script will split all sequences from fasta file(s) (or stdin) to individual files. The filename is the sequence ID (everything before the 1st whitespace in a FASTA header). Currently it doesn't check to see that it isn't overwriting an existing file so IDs should be unique

This is inspired by EMBOSS seqretsplit tool.

FEEDBACK ^

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
    http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:

https://redmine.open-bio.org/projects/bioperl/

AUTHOR ^

Jason Stajich <jason_AT_bioperl_DOT_org>

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