Christopher Fields > BioPerl-1.6.923 > bp_aacomp

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Source   Latest Release: BioPerl-1.6.924

NAME ^

bp_aacomp - amino acid composition of protein sequences

SYNOPSIS ^

  bp_aacomp [-f/--format FORMAT] [-h/--help] filename
  or
  bp_aacomp [-f/--format FORMAT] < filename
  or
  bp_aacomp [-f/--format FORMAT] -i filename

DESCRIPTION ^

This scripts prints out the count of amino acids over all protein sequences from the input file.

OPTIONS ^

The default sequence format is fasta.

The sequence input can be provided using any of the three methods:

unnamed argument
  bp_aacomp filename
named argument
  bp_aacomp -i filename
standard input
  bp_aacomp < filename

FEEDBACK ^

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Jason Stajich ^

Email jason@bioperl.org

HISTORY ^

Based on aacomp.c from an old version of EMBOSS

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