Christopher Fields > BioPerl-DB-1.006900

BioPerl-DB-1.006900

This Release BioPerl-DB-1.006900  [Download] [Browse 15 Apr 2011
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License The Perl 5 License (Artistic 1 & GPL 1)
Special Files
Build.PL
Changes
INSTALL
LICENSE
Makefile.PL
MANIFEST
META.json
README

Modules

Bio::BioEntry DESCRIPTION of Object      
Bio::DB::BioDB class creating the adaptor factory for a particular database      
Bio::DB::BioSQL::AnnotationCollectionAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::BaseDriver DESCRIPTION of Object      
Bio::DB::BioSQL::BasePersistenceAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::BioNamespaceAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::BiosequenceAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::ClusterAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::CommentAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::DBAdaptor Object representing an instance of a bioperl database      
Bio::DB::BioSQL::DBLinkAdaptor DBLink Adaptor      
Bio::DB::BioSQL::LocationAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::MultiDB      
Bio::DB::BioSQL::OBDA      
Bio::DB::BioSQL::OntologyAdaptor DB Adaptor for Ontology objects      
Bio::DB::BioSQL::Oracle::AnnotationCollectionAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::Oracle::BasePersistenceAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::Oracle::BiosequenceAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::Oracle::PathAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::Oracle::SpeciesAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::Oracle::TermAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::PathAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::Pg::AnnotationCollectionAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::Pg::BasePersistenceAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::Pg::BiosequenceAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::Pg::PathAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::Pg::SpeciesAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::Pg::TermAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::PrimarySeqAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::ReferenceAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::RelationshipAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::SeqAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::SeqFeatureAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::SimpleValueAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::SpeciesAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::TermAdaptor DESCRIPTION of Object      
Bio::DB::BioSQL::mysql::AnnotationCollectionAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::mysql::BasePersistenceAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::mysql::BiosequenceAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::mysql::PathAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::mysql::SpeciesAdaptorDriver DESCRIPTION of Object      
Bio::DB::BioSQL::mysql::TermAdaptorDriver DESCRIPTION of Object      
Bio::DB::CacheServer::SeqDB Caching DB object      
Bio::DB::DBAdaptorI DESCRIPTION of Interface      
Bio::DB::DBContextI Interface for a class implementing a database context      
Bio::DB::DBD DESCRIPTION of Interface      
Bio::DB::DBI DESCRIPTION of Interface      
Bio::DB::DBI::Oracle DESCRIPTION of Object      
Bio::DB::DBI::Pg DESCRIPTION of Object      
Bio::DB::DBI::Transaction DESCRIPTION of Object      
Bio::DB::DBI::TransactionListener a simple transaction listener      
Bio::DB::DBI::base base class for drivers implementing Bio::DB::DBI      
Bio::DB::DBI::mysql DESCRIPTION of Object      
Bio::DB::EasyArgv      
Bio::DB::PersistenceAdaptorI DESCRIPTION of Interface      
Bio::DB::Persistent::BioNamespace DESCRIPTION of Object      
Bio::DB::Persistent::ObjectRellMapperI DESCRIPTION of Interface      
Bio::DB::Persistent::PersistentObject makes a given object persistent      
Bio::DB::Persistent::PersistentObjectFactory DESCRIPTION of Object      
Bio::DB::Persistent::PrimarySeq Proxy object for database PrimarySeq representations      
Bio::DB::Persistent::Seq Proxy object for database PrimarySeq representations      
Bio::DB::Persistent::SeqFeature Proxy object for database SeqFeatureI representations      
Bio::DB::PersistentObjectI DESCRIPTION of Interface      
Bio::DB::Query::AbstractQuery Abstract Query class      
Bio::DB::Query::BioQuery Object representing a query on a bioperldb      
Bio::DB::Query::DBQueryResult DESCRIPTION of Object      
Bio::DB::Query::PrebuiltResult DESCRIPTION of Object      
Bio::DB::Query::QueryConstraint a constraint on a variable value in a query      
Bio::DB::Query::QueryResultI DESCRIPTION of Interface      
Bio::DB::Query::SqlGenerator Object representing an SQL Query      
Bio::DB::Query::SqlQuery Object representing an SQL Query      
Bio::DB::SimpleDBContext a base implementation of Bio::DB::DBContextI      

Documentation

add-term-annot.pl  
drop_mysql_biosql_test_dbs  
load_ontology.pl  
load_seqdatabase.pl  

Other Files

docs/HOWTO-MySQL.html