Christopher Fields > BioPerl > Bio::PhyloNetwork::TreeFactoryMulti

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BioPerl-1.6.923.tar.gz

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NAME ^

Bio::PhyloNetwork::TreeFactoryMulti - Module to sequentially generate Phylogenetic Trees

SYNOPSIS ^

 use strict;
 use warnings;

 use Bio::PhyloNetwork;
 use Bio::PhyloNetwork::TreeFactory;

 # Will generate sequentially all the 15 binary phylogetic
 # trees with 4 leaves

 my $factory=Bio::PhyloNetwork::TreeFactory->new(-numleaves=>4);

 my @nets;

 while (my $net=$factory->next_network()) {
   push @nets,$net;
   print "".(scalar @nets).": ".$net->eNewick()."\n";
 }

DESCRIPTION ^

Sequentially builds a (binary) phylogenetic tree each time next_network is called.

AUTHOR ^

Gabriel Cardona, gabriel(dot)cardona(at)uib(dot)es

SEE ALSO ^

Bio::PhyloNetwork

APPENDIX ^

The rest of the documentation details each of the object methods.

new

 Title   : new
 Usage   : my $factory = new Bio::PhyloNetwork::TreeFactory();
 Function: Creates a new Bio::PhyloNetwork::TreeFactory
 Returns : Bio::PhyloNetwork::RandomFactory
 Args    : -numleaves => integer
            OR
           -leaves => reference to an array (of leaves names)

Returns a Bio::PhyloNetwork::TreeFactory object. Such an object will sequentially create binary phylogenetic trees each time next_network is called.

If the parameter -leaves=>\@leaves is given, then the set of leaves of these networks will be @leaves. If it is given the parameter -numleaves=>$numleaves, then the set of leaves will be "l1"..."l$numleaves".

next_network

 Title   : next_network
 Usage   : my $net=$factory->next_network()
 Function: returns a tree
 Returns : Bio::PhyloNetwork
 Args    : none
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