Bio::Seq::SeqFactory - Instantiation of generic Bio::PrimarySeqI (or derived) objects through a factory
use Bio::Seq::SeqFactory; my $factory = Bio::Seq::SeqFactory->new(); my $primaryseq = $factory->create( -seq => 'WYRAVLC', -id => 'name' ); # Create Bio::Seq instead of Bio::PrimarySeq objects: my $factory = Bio::Seq::SeqFactory->new( -type => 'Bio::Seq' );
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = Bio::Seq::SeqFactory->new(); Function: Builds a new Bio::Seq::SeqFactory object Returns : Bio::Seq::SeqFactory Args : -type => string, name of a PrimarySeqI derived class This is optional. Default=Bio::PrimarySeq.
Title : create Usage : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name'); Function: Instantiates new Bio::SeqI (or one of its child classes) This object allows us to genericize the instantiation of sequence objects. Returns : Bio::PrimarySeq object (default) The return type is configurable using new(-type =>"..."). Args : initialization parameters specific to the type of sequence object we want. Typically -seq => $str, -display_id => $name
Title : type Usage : $obj->type($newval) Function: Returns : value of type Args : newvalue (optional)