Christopher Fields > BioPerl > Bio::Tools::AlignFactory

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NAME ^

Bio::Tools::AlignFactory - Base object for alignment factories

SYNOPSIS ^

You wont be using this as an object, but using a dervied class like Bio::Tools::pSW

DESCRIPTION ^

Holds common Alignment Factory attributes in place

CONTACT ^

http://bio.perl.org/ or birney@sanger.ac.uk

APPENDIX ^

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

kbyte

 Title     : kbyte()
 Usage     : set/gets the amount of memory able to be used
 Function  : 
           : $factory->kbyte(200);
           :
 Returns   : 
 Argument  : memory in kilobytes

report

 Title     : report()
 Usage     : set/gets the report boolean to issue reports or not
 Function  : 
           : $factory->report(1); # reporting goes on
           :
 Returns   : n/a
 Argument  : 1 or 0

set_memory_and_report

 Title   : set_memory_and_report
 Usage   : Only used by subclasses.
 Function:
 Example :
 Returns : 
 Args    :
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