deprecated.pl - Check modules and scripts for use of deprecated modules and methods, indicates presence in a file to STDERR. Optionally accepts new modules and adds them to a newly formatted deprecation file.
deprecated.pl [-d|--dir path ] [-v|--verbose] [-a|--depfile] [-n|--new] [-w|--write] [-o|--outfile] [-?|-h|--help]
Overides the default directories to check by one directory 'path' and all its subdirectories.
path from working directory that contains the DEPRECATED file.
New addition to the deprecation list; this should be in the form of 'Module,dep_release,remove_release,notes'. Notes should only be 40 chars long.
BioPerl version. This only appears to work correctly when using numerical versions (1.5.2 instead of 1.005002)
Write out new deprecation file to $outfile. If --new is used this is assumed.
Name of output file to write deprecation table to. DEPRECATED.NEW is the default name
Show the progress through files during the checking.
This help text.
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