Chris Mungall > go-db-perl-0.01 > GO::Tango

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NAME ^

  GO::Tango - Tango ANnotates GO

SYNOPSIS ^

DESCRIPTION ^

THIS IS ALPHA CODE; API SUBJECT TO CHANGE

CREDITS ^

PUBLIC METHODS ^

new

  Usage   - $tango = GO::Tango->new({apph=>$apph})
  Returns - GO::Tango
  Args    -

xrefs_to_terms

  Usage   - $terms = $tango->xrefs_to_terms([$xref1, $xref2])
  OR      - $terms =
               $tango->xrefs_to_terms(-dbname=>"interpro",
                                      -xrefs=>["IPR00001", "IPR000002"])
  OR      - $terms =
               $tango->xrefs_to_terms(["interpro:IPR000001", "interpro:IPR000001"]);
  Usage   - $terms = $tango->xrefs_to_terms([$xref1, $xref2])
  Usage   - $terms = $tango->xrefs_to_terms([$xref1, $xref2])
  Returns - GO::Model::Term listref
  Args    - GO::Model::Xref list

evaluate_guess

  Usage   -
  Returns -
  Args    -

get_seq_xrefs_stats

  Usage   - $h = $apph->get_seq_xrefs_stats({term=>4888}, "InterPro");
  Returns - hashref
  Args    - constr [hash], dbname [str]

STATUS: ALPHA (subject to change)

returns a hashref keyed by accession nos with the count of each accession

eg the example query above will return a hash of interpro domain ids with the total number of times that interpro domain occurs in all the sequences of all products attached to or below transmembrane receptor

FEEDBACK ^

Email cjm@fruitfly.berkeley.edu

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself

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