GO::Model::Seq;
print $gene_product->seq->seq;
represents a biological sequence; uses the bioperl Bio::PrimarySeq class
any call that you can do on a bioperl sequence object, you can do here, with the addition of the calls below
to get bioperl, see http://www.bioperl.org
Usage - Returns - Bio::PrimarySeq Args -
Usage - my $md5 = $seq->md5checksum() OR $seq->md5checksum($md5) Returns - 32 char hex string Args - 32 char hex string [optional]
checksum for seq - easy way to check if it has been changed etc
(requires Digest::MD5 module from CPAN)
Usage - Returns - Args -
- Usage : $term->add_xref($xref); - Args : GO::Term::Xref
To install GO::Utils, copy and paste the appropriate command in to your terminal.
cpanm
cpanm GO::Utils
CPAN shell
perl -MCPAN -e shell install GO::Utils
For more information on module installation, please visit the detailed CPAN module installation guide.