GO::Parsers::go_ont_parser - syntax parsing of GO .ontology flat files
do not use this class directly; use GO::Parser
This generates Stag event streams from one of the various GO flat file formats (ontology, defs, xref, associations). See GO::Parser for details
Examples of these files can be found at http://www.geneontology.org
A description of the event streams generated follows; Stag or an XML handler can be used to catch these events
These files have the .ontology suffix. The stag-schema for the event streams generated look like this:
(ontology (source (source_type "s") (source_path "s") (source_mtime "i")) (term+ (id "s") (name "s") (is_root? "i") (relationship+ (type "s") (to "s")) (dbxref* (dbname "s") (acc "s")) (synonym* "s") (secondaryid* "s") (is_obsolete? "i")))
To install GO::Utils, copy and paste the appropriate command in to your terminal.
cpanm
cpanm GO::Utils
CPAN shell
perl -MCPAN -e shell install GO::Utils
For more information on module installation, please visit the detailed CPAN module installation guide.