Chris Mungall / go-perl - search.cpan.org

Modules

GO::Basic	basic procedural interface to go-perl
GO::Handlers::abstract_prolog_writer
GO::Handlers::abstract_sql_writer
GO::Handlers::base
GO::Handlers::go_def
GO::Handlers::go_ont
GO::Handlers::go_xref
GO::Handlers::godb_prestore	transforms OBO XML to GODB XML
GO::Handlers::lexanalysis
GO::Handlers::lexanalysis2sql
GO::Handlers::obj	parses GO files into GO object model
GO::Handlers::obj_storable
GO::Handlers::obj_yaml
GO::Handlers::obo
GO::Handlers::obo_godb_flat
GO::Handlers::obo_html
GO::Handlers::obo_sxpr
GO::Handlers::obo_text
GO::Handlers::obo_xml
GO::Handlers::owl	writes OWL
GO::Handlers::owl_to_obo_text
GO::Handlers::pathlist
GO::Handlers::prolog
GO::Handlers::rdf
GO::Handlers::summary
GO::Handlers::sxpr
GO::Handlers::tbl
GO::Handlers::text_html
GO::Handlers::xml
GO::Handlers::xsl_base
GO::IO::Analysis	preliminary analysis object
GO::IO::Blast	Gene Ontology Blast Reports DEPRECATED
GO::IO::Dotty
GO::IO::OBDXML
GO::IO::ObanOwl
GO::IO::RDFXML
GO::IO::XML
GO::IO::go_assoc
GO::Metadata::Panther	Species info for data used by Panther Clusters
GO::Model::Association
GO::Model::CrossProduct
GO::Model::DB
GO::Model::Evidence
GO::Model::GeneProduct
GO::Model::Graph	a collection of relationships over terms
GO::Model::GraphIterator
GO::Model::GraphNodeInstance	a graph node located in a tree
GO::Model::LogicalDefinition
GO::Model::Modification
GO::Model::Ontology
GO::Model::Path
GO::Model::Property
GO::Model::Relationship
GO::Model::Restriction
GO::Model::Root
GO::Model::Seq
GO::Model::Species
GO::Model::Term	a term or concept in an ontology
GO::Model::TreeIterator
GO::Model::Xref
GO::ObjCache
GO::ObjFactory	GO Object Factory
GO::Parser	parses all GO files formats and types
GO::Parsers::ParserEventNames	exports constants corresponding to XML
GO::Parsers::base_parser	base class for parsers
GO::Parsers::generic_tagval_parser	syntax parsing of GO .def flat files
GO::Parsers::go_assoc_parser	syntax parsing of GO gene-association flat files
GO::Parsers::go_def_parser	syntax parsing of GO .def flat files
GO::Parsers::go_ids_parser	syntax parsing of flat files containing GO IDs.
GO::Parsers::go_ont_parser	syntax parsing of GO .ontology flat files
GO::Parsers::go_xref_parser	syntax parsing of GO xref flat files (eg eg2go, metacyc2go)
GO::Parsers::locuslink_parser
GO::Parsers::mesh_parser	Parses Mesh ascii text files
GO::Parsers::mgi_assoc_parser	parses MGI gene assoc stanza files
GO::Parsers::ncbi_taxon_names_parser	OBO Flat file parser object
GO::Parsers::ncbi_taxonomy_parser
GO::Parsers::obj_emitter
GO::Parsers::obj_storable_parser
GO::Parsers::obj_yaml_parser
GO::Parsers::obo_parser
GO::Parsers::obo_text_parser	OBO Flat file parser object
GO::Parsers::obo_xml_parser	Parses xml made from events
GO::Parsers::owl_parser	turns OWL XML into event stream
GO::Parsers::references_parser	syntax parsing of GO.refences files
GO::Parsers::refgenomes_parser	syntax parsing of GO .def flat files
GO::Parsers::unknown_format_parser	base class for parsers
GO::Parsers::xrf_abbs_parser	syntax parsing of GO xrf_abbs flat files
GO::Utils

Bio::Parser::owl_to_obo_text
GO::IO::Dotty;
GO::IO::OBDXML;
GO::IO::ObanOwl;
GO::IO::RDFXML;
GO::IO::go_assoc;
GO::Model::Association;
GO::Model::CrossProduct;
GO::Model::DB;
GO::Model::Evidence;
GO::Model::GeneProduct;
GO::Model::GraphIterator;
GO::Model::LogicalDefinition;
GO::Model::Modification;
GO::Model::Ontology;
GO::Model::Path;
GO::Model::Property;
GO::Model::Restriction;
GO::Model::Seq;
GO::Model::Species;
GO::Model::Xref;
GO::ObjCache;
go-dag-summary
go-export-graph.pl
go-filter-subset.pl	extracts a subgraph from an ontology file
go-make-slim.pl	generates a slim file based on association file
go-perl	perl modules for GO and other OBO ontologies
go-show-assocs-by-node.pl	find association for a GO term
go-show-paths-to-root.pl	shows all possible paths from a term to the top
go2fmt.pl	go2obo_xml go2owl go2rdf_xml go2obo_text
map2slim	maps gene associations to a 'slim' ontology

go-perl

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