Chris Mungall > go-perl

go-perl

This Release go-perl-0.15  [Download] [Browse 12 Jun 2013
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Special Files
Changes
INSTALL
Makefile.PL
MANIFEST
META.json
README

Modules

GO::Basic basic procedural interface to go-perl      
GO::Handlers::abstract_prolog_writer      
GO::Handlers::abstract_sql_writer      
GO::Handlers::base      
GO::Handlers::go_def      
GO::Handlers::go_ont      
GO::Handlers::go_xref      
GO::Handlers::godb_prestore transforms OBO XML to GODB XML      
GO::Handlers::lexanalysis      
GO::Handlers::lexanalysis2sql      
GO::Handlers::obj parses GO files into GO object model      
GO::Handlers::obj_storable      
GO::Handlers::obj_yaml      
GO::Handlers::obo      
GO::Handlers::obo_godb_flat      
GO::Handlers::obo_html      
GO::Handlers::obo_sxpr      
GO::Handlers::obo_text      
GO::Handlers::obo_xml      
GO::Handlers::owl writes OWL      
GO::Handlers::owl_to_obo_text      
GO::Handlers::pathlist      
GO::Handlers::prolog      
GO::Handlers::rdf      
GO::Handlers::summary      
GO::Handlers::sxpr      
GO::Handlers::tbl      
GO::Handlers::text_html      
GO::Handlers::xml      
GO::Handlers::xsl_base      
GO::IO::Analysis preliminary analysis object      
GO::IO::Blast Gene Ontology Blast Reports DEPRECATED      
GO::IO::Dotty      
GO::IO::OBDXML      
GO::IO::ObanOwl      
GO::IO::RDFXML      
GO::IO::XML      
GO::IO::go_assoc      
GO::Metadata::Panther Species info for data used by Panther Clusters      
GO::Model::Association      
GO::Model::CrossProduct      
GO::Model::DB      
GO::Model::Evidence      
GO::Model::GeneProduct      
GO::Model::Graph a collection of relationships over terms      
GO::Model::GraphIterator      
GO::Model::GraphNodeInstance a graph node located in a tree      
GO::Model::LogicalDefinition      
GO::Model::Modification      
GO::Model::Ontology      
GO::Model::Path      
GO::Model::Property      
GO::Model::Relationship      
GO::Model::Restriction      
GO::Model::Root      
GO::Model::Seq      
GO::Model::Species      
GO::Model::Term a term or concept in an ontology      
GO::Model::TreeIterator      
GO::Model::Xref      
GO::ObjCache      
GO::ObjFactory GO Object Factory      
GO::Parser parses all GO files formats and types      
GO::Parsers::ParserEventNames exports constants corresponding to XML      
GO::Parsers::base_parser base class for parsers      
GO::Parsers::generic_tagval_parser syntax parsing of GO .def flat files      
GO::Parsers::go_assoc_parser syntax parsing of GO gene-association flat files      
GO::Parsers::go_def_parser syntax parsing of GO .def flat files      
GO::Parsers::go_ids_parser syntax parsing of flat files containing GO IDs.      
GO::Parsers::go_ont_parser syntax parsing of GO .ontology flat files      
GO::Parsers::go_xref_parser syntax parsing of GO xref flat files (eg eg2go, metacyc2go)      
GO::Parsers::locuslink_parser      
GO::Parsers::mesh_parser Parses Mesh ascii text files      
GO::Parsers::mgi_assoc_parser parses MGI gene assoc stanza files      
GO::Parsers::ncbi_taxon_names_parser OBO Flat file parser object      
GO::Parsers::ncbi_taxonomy_parser      
GO::Parsers::obj_emitter      
GO::Parsers::obj_storable_parser      
GO::Parsers::obj_yaml_parser      
GO::Parsers::obo_parser      
GO::Parsers::obo_text_parser OBO Flat file parser object      
GO::Parsers::obo_xml_parser Parses xml made from events      
GO::Parsers::owl_parser turns OWL XML into event stream      
GO::Parsers::references_parser syntax parsing of GO.refences files      
GO::Parsers::refgenomes_parser syntax parsing of GO .def flat files      
GO::Parsers::unknown_format_parser base class for parsers      
GO::Parsers::xrf_abbs_parser syntax parsing of GO xrf_abbs flat files      
GO::Utils      

Documentation

Bio::Parser::owl_to_obo_text  
GO::IO::Dotty;  
GO::IO::OBDXML;  
GO::IO::ObanOwl;  
GO::IO::RDFXML;  
GO::IO::go_assoc;  
GO::Model::Association;  
GO::Model::CrossProduct;  
GO::Model::DB;  
GO::Model::Evidence;  
GO::Model::GeneProduct;  
GO::Model::GraphIterator;  
GO::Model::LogicalDefinition;  
GO::Model::Modification;  
GO::Model::Ontology;  
GO::Model::Path;  
GO::Model::Property;  
GO::Model::Restriction;  
GO::Model::Seq;  
GO::Model::Species;  
GO::Model::Xref;  
GO::ObjCache;  
go-dag-summary  
go-export-graph.pl  
go-filter-subset.pl extracts a subgraph from an ontology file  
go-make-slim.pl generates a slim file based on association file  
go-perl perl modules for GO and other OBO ontologies  
go-show-assocs-by-node.pl find association for a GO term  
go-show-paths-to-root.pl shows all possible paths from a term to the top  
go2fmt.pl go2obo_xml go2owl go2rdf_xml go2obo_text  
map2slim maps gene associations to a 'slim' ontology  

Other Files

INSTALL.html
doc/go-perl-doc.html
doc/go-perl-event-handling.html