change-ids-ali.pl - Change (abbreviate or restore) ids' org component in ALI files
version 0.173620
change-ids-ali.pl <infiles> --org-mapper=<file> --mode=<dir> [optional arguments]
Path to input ALI files [repeatable argument].
Path to the IDM file listing the long_org => abbr_org pairs.
Direction of the id changing operation. The following directions are available: long2abbr and abbr2long.
Suffix to append to infile basenames for deriving outfile names [default: none]. When not specified, outfile names are taken from infiles but original infiles are preserved by being appended a .bak suffix.
[Don't] guess whether sequences are aligned or not [default: yes].
Store the IDM file corresponding to each output file [default: no].
Print the usual program information
Denis BAURAIN <denis.baurain@uliege.be>
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
To install Bio::MUST::Core, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::MUST::Core
CPAN shell
perl -MCPAN -e shell install Bio::MUST::Core
For more information on module installation, please visit the detailed CPAN module installation guide.